Hmmm... Twilight Princess had a great ending and way epic cutscenes with fun places to mess around, but some of the early plot twists seemed like butt pulls.
Ocarina of Time is just great overall, but it's a little redundant and I can't stand Link's voice.
Majora's Mask is so very entertaining with some of my favorite characters and the all too nessicary crack-ness, but it was a pain in the rear end!
Wind Waker gives you a little more freedom to do the game you want and even spend hours shooting my own action-spy-thrillers! 8D But some of the sailing takes too long.
The legend of Zalda: Ocarina of Time. The legend of Zelda: Twilight Princess. The legend of Zelda: A Link to the Past. The legend of Zelda: Minish cap. The legend of Zelda: Four Sword adventure. The legend of Zelda: Oracle of Ages.