AGVegetarian
Palundrium
It wouldn't be the stop bath. That simply haults the developing process from the developer. My guess is that it's something with the fixer. After short while, from an hour to a few days, if the fixer wasn't stronger enough or the photo not left in it long enough, the paper will start to darken as there are still light sensistive materials that haven't been properly removed.
Is it RC or fiber-based paper and how long are you leaving it in the fixer? And you're making sure to drip about 15 seconds before transfering the photo to different chemicals? Contamination could be a problem too.
I'd like to echo that it is most likely a contamination.
Also are you printing in color or black and white?
To avoid spots just make sure your photo submerges all the way. Place it face down if you really need to...
*I meant fixer, not stop bath. dumb me.
It's also black and white.
It shouldn't be contamination. I've tried really rinsing the paper before putting it in the fixer and it still happens. I'm still wondering if it could be the paper. It's really weird to e because it takes about two days for the orange blotchiness to appear. It also doesn't appear in spots, it appears in contour blotches between contrasted areas.